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xportr - Utilities to Output CDISC SDTM/ADaM XPT Files

Tools to build CDISC compliant data sets and check for CDISC compliance.

Last updated

clinical-programmersxpt

10.52 score 54 stars 1 dependents 310 scripts 1.4k downloads

metacore - A Centralized Metadata Object Focus on Clinical Trial Data Programming Workflows

Create an immutable container holding metadata for the purpose of better enabling programming activities and functionality of other packages within the clinical programming workflow.

Last updated

9.83 score 50 stars 1 dependents 311 scripts 1.6k downloads

Tplyr - A Traceability Focused Grammar of Clinical Data Summary

A traceability focused tool created to simplify the data manipulation necessary to create clinical summaries.

Last updated

pharmatables

9.56 score 109 stars 161 scripts 842 downloads

pharmaRTF - Enhanced RTF Wrapper for Use with Existing Table Packages

Enhanced RTF wrapper written in R for use with existing R tables packages such as 'Huxtable' or 'GT'. This package fills a gap where tables in certain packages can be written out to RTF, but cannot add certain metadata or features to the document that are required/expected in a report for a regulatory submission, such as multiple levels of titles and footnotes, making the document landscape, and controlling properties such as margins.

Last updated

7.28 score 34 stars 139 scripts 599 downloads

tplyr2 - A Grammar of Clinical Summary Tables

Implements a grammar of summary data for clinical reports. Clinical summary tables are decomposed into modular layers, each representing an independent summary block. Supports count, descriptive statistics, and shift layer types with a declarative spec-based API built on data.table for performance.

Last updated

7.18 score 5 stars 61 scripts 224 downloads

datasetjson - Read and Write CDISC Dataset JSON Files

Read, construct and write CDISC (Clinical Data Interchange Standards Consortium) Dataset JSON (JavaScript Object Notation) files, while validating per the Dataset JSON schema file, as described in CDISC (2023) <https://www.cdisc.org/standards/data-exchange/dataset-json>.

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cdiscdataset-jsonzlib

6.92 score 27 stars 62 scripts 561 downloads

clinify - Clinical Table Styling Tools and Utilities

The primary motivation of this package is to take the things that are great about the R packages 'flextable' <https://davidgohel.github.io/flextable/> and 'officer' <https://davidgohel.github.io/officer/>, take the standard and complex pieces of formatting clinical tables for regulatory use, and simplify the tedious pieces.

Last updated

6.22 score 6 stars 31 scripts 346 downloads

abba - Batch Execution of R Programs on 'Kubernetes', 'SLURM', and 'Posit Workbench'

Submit and monitor batch execution of R programs across distributed computing backends including 'Kubernetes', 'SLURM', and 'Posit Workbench'. Provides end-user job submission functions, cluster interface functions using 'kubectl' and 'SLURM' commands, and a 'plumber' API template for secure identity segregation. Supports parallel and sequential batch execution, file-based caching to skip unchanged programs, and 'logrx' integration for execution logging.

Last updated

5.15 score 2 stars 8 scripts 669 downloads

egnyte - Read and Write Files from Egnyte

Provides functions to read and write files from Egnyte cloud storage using the Egnyte API. Supports both API key and OAuth 2.0 authentication for file transfer operations.

Last updated

4.60 score 1 stars 6 scripts 274 downloads