xportr - Utilities to Output CDISC SDTM/ADaM XPT Files

Tools to build CDISC compliant data sets and check for CDISC compliance.

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clinical-programmersxpt

10.09 score 52 stars 1 dependents 188 scripts 1.3k downloads

metacore - A Centralized Metadata Object Focus on Clinical Trial Data Programming Workflows

Create an immutable container holding metadata for the purpose of better enabling programming activities and functionality of other packages within the clinical programming workflow.

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9.69 score 47 stars 1 dependents 222 scripts 1.7k downloads

Tplyr - A Traceability Focused Grammar of Clinical Data Summary

A traceability focused tool created to simplify the data manipulation necessary to create clinical summaries.

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pharmatables

9.02 score 108 stars 162 scripts 1.2k downloads

pharmaRTF - Enhanced RTF Wrapper for Use with Existing Table Packages

Enhanced RTF wrapper written in R for use with existing R tables packages such as 'Huxtable' or 'GT'. This package fills a gap where tables in certain packages can be written out to RTF, but cannot add certain metadata or features to the document that are required/expected in a report for a regulatory submission, such as multiple levels of titles and footnotes, making the document landscape, and controlling properties such as margins.

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7.22 score 34 stars 123 scripts 701 downloads

datasetjson - Read and Write CDISC Dataset JSON Files

Read, construct and write CDISC (Clinical Data Interchange Standards Consortium) Dataset JSON (JavaScript Object Notation) files, while validating per the Dataset JSON schema file, as described in CDISC (2023) <https://www.cdisc.org/standards/data-exchange/dataset-json>.

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cdiscdataset-json

6.57 score 25 stars 30 scripts 665 downloads

clinify - Clinical Table Styling Tools and Utilities

The primary motivation of this package is to take the things that are great about the R packages 'flextable' <https://davidgohel.github.io/flextable/> and 'officer' <https://davidgohel.github.io/officer/>, take the standard and complex pieces of formatting clinical tables for regulatory use, and simplify the tedious pieces.

Last updated

5.86 score 6 stars 9 scripts 223 downloads

abba - Batch Execution of R Programs on 'Kubernetes', 'SLURM', and 'Posit Workbench'

Submit and monitor batch execution of R programs across distributed computing backends including 'Kubernetes', 'SLURM', and 'Posit Workbench'. Provides end-user job submission functions, cluster interface functions using 'kubectl' and 'SLURM' commands, and a 'plumber' API template for secure identity segregation. Supports parallel and sequential batch execution, file-based caching to skip unchanged programs, and 'logrx' integration for execution logging.

Last updated

5.15 score 2 stars 518 downloads

egnyte - Read and Write Files from Egnyte

Provides functions to read and write files from Egnyte cloud storage using the Egnyte API. Supports both API key and OAuth 2.0 authentication for file transfer operations.

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4.60 score 1 stars 6 scripts 150 downloads