Package: clinify 0.4.0

Mike Stackhouse

clinify: Clinical Table Styling Tools and Utilities

The primary motivation of this package is to take the things that are great about the R packages 'flextable' <https://davidgohel.github.io/flextable/> and 'officer' <https://davidgohel.github.io/officer/>, take the standard and complex pieces of formatting clinical tables for regulatory use, and simplify the tedious pieces.

Authors:Mike Stackhouse [aut, cre], Ross Didenko [aut], Yevhenii Boiko [aut], Marat Zakirov [ctb], Roman Rogoza [ctb], Atorus Research, Inc. [cph], Incyte Corporation [cph]

clinify_0.4.0.tar.gz
clinify_0.4.0.zip(r-4.7-any)clinify_0.4.0.zip(r-4.6-any)clinify_0.4.0.zip(r-4.5-any)
clinify_0.4.0.tgz(r-4.6-any)clinify_0.4.0.tgz(r-4.5-any)
clinify_0.4.0.tar.gz(r-4.7-any)clinify_0.4.0.tar.gz(r-4.6-any)
clinify_0.4.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
clinify/json (API)

# Install 'clinify' in R:
install.packages('clinify', repos = c('https://atorus-research.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/atorus-research/clinify/issues

Pkgdown/docs site:https://atorus-research.github.io

On CRAN:

Conda:

6.22 score 6 stars 31 scripts 346 downloads 29 exports 60 dependencies

Last updated from:f67a3dfaff. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-develOK367
source / vignettesOK227
linux-releaseOK231
macos-releaseOK212
macos-oldrelOK145
windows-develOK175
windows-releaseOK166
windows-oldrelOK191
wasm-releaseOK162

Exports:as_clindocas_clintableclin_add_footnote_pageclin_add_footnotesclin_add_titlesclin_alt_pagesclin_auto_pageclin_col_widthsclin_column_headersclin_default_table_widthclin_group_byclin_group_padclin_header_padclin_page_byclin_replace_pagenumsclin_row_heightclin_spanner_ruleclin_table_alignclindocclinify_caption_defaultclinify_docx_defaultclinify_footnotes_defaultclinify_grouplabel_defaultclinify_table_defaultclinify_titles_defaultclintablemake_grouped_pagenumsnew_title_footnotewrite_clindoc

Dependencies:askpassbase64encbslibcachemclicpp11data.tabledigestdplyrevaluatefastmapflextablefontawesomefontBitstreamVerafontLiberationfontquiverfsgdtoolsgenericsgluehighrhtmltoolsjquerylibjsonliteknitrlatticelifecyclemagrittrmemoisemimeofficeropensslpillarpkgconfigpurrrR6raggrappdirsRcpprlangrmarkdownsassstringistringrsyssystemfontstextshapingtibbletidyrtidyselecttinytexutf8uuidvctrswithrxfunxml2yamlzipzoo

Getting Started
Basics | Titles and Footnotes | Pagination and Alternating Pages | Column Headers and Widths | Writing to DOCX | Why this framework?
Rendered fromclinify.Rmdusingknitr::rmarkdown

Last update: 2026-07-26
Started: 2025-03-04

Setting Clinify Defaults
Creating Setting Functions | clinify_docx_default | clinify_titles_default and clin_footnotes_default() | clinify_table_default | clinify_grouplabel_default | clinify_caption_default | Applying the Options
Rendered fromdefaults.Rmdusingknitr::rmarkdown

Last update: 2026-07-26
Started: 2025-03-31

Titles and Footnotes
Titles and footnotes from a spec | Footnote Pages
Rendered fromtitles_footnotes.Rmdusingknitr::rmarkdown

Last update: 2026-07-26
Started: 2025-03-31

Document Objects and Saving
Rendered fromwrite.Rmdusingknitr::rmarkdown

Last update: 2025-06-10
Started: 2025-06-10

End-to-End Example
Rendered fromend_to_end.Rmdusingknitr::rmarkdown

Last update: 2025-06-10
Started: 2025-03-31

Pagination
clin_auto_page() | clin_page_by() | clin_group_by() | clin_alt_pages()
Rendered frompagination.Rmdusingknitr::rmarkdown

Last update: 2025-06-10
Started: 2025-03-31

Readme and manuals

Help Manual

Help pageTopics
Convert a flextable into a clintable objectas_clintable
Add titles, footnotes, or a footnote page to a clintable or clindocclin_add_footnotes clin_add_footnote_page clin_add_titles
Configure alternating pages during pagination of a clintableclin_alt_pages
Enable Word Auto-Pagination Using Group Variableclin_auto_page
Set column widths using percentclin_col_widths
Set the column headers of the output clintableclin_column_headers
Get the Default Table Width for Clinical Documentsclin_default_table_width
Configure a clintable to table by a grouping variable, which will be used as a labelclin_group_by
Add Padding Between Groups in a Clinical Flextableclin_group_pad
Set the spacing around a table's column headersclin_header_pad
Configure pagination using a page variableclin_page_by
Replace Table Cells with Word Page Number Fieldsclin_replace_pagenums
Set the row height of a clintableclin_row_height
Draw a rule beneath the spanners in a clintable's column headersclin_spanner_rule
Set how a table sits across the pageclin_table_align
Create a 'clindoc' objectas_clindoc clindoc
Apply Default Clinical Styling to Clintablesclinify_caption_default clinify_docx_default clinify_footnotes_default clinify_grouplabel_default clinify_table_default clinify_titles_default
Create a new clintable objectclintable
Assign Page Numbers to Presorted Grouped Datamake_grouped_pagenums
Create a new title or footnote flextablenew_title_footnote
Clintable print methodknit_print.clintable print.clintable
Clintable write methodwrite_clindoc