{
  "_id": "6a1061b0acfb0bcc41ca7bcd",
  "Package": "clinify",
  "Type": "Package",
  "Title": "Clinical Table Styling Tools and Utilities",
  "Version": "0.3.0.9000",
  "Authors@R": "c(\nperson(given = \"Mike\",\nfamily = \"Stackhouse\",\nrole = c(\"aut\", \"cre\"),\nemail = \"mike.stackhouse@atorusresearch.com\",\ncomment = c(ORCID = \"0000-0001-6030-723X\")),\nperson(\"Ross\", \"Didenko\", email = \"rostyslav.didenko@atorusresearch.com\", role = c(\"aut\")),\nperson(\"Yevhenii\", \"Boiko\", email = \"yevhenii.boiko@atorusresearch.com\", role = c(\"aut\")),\nperson(\"Marat\", \"Zakirov\", email = \"marat.zakirov@atorusresearch.com\", role = \"ctb\"),\nperson(\"Roman\", \"Rogoza\", email = \"roman.rogoza@atorusresearch.com\", role = \"ctb\"),\nperson(given = \"Atorus Research, Inc.\",\nrole = \"cph\"),\nperson(given = \"Incyte Corporation\", role=\"cph\"))",
  "Description": "The primary motivation of this package is to take the\nthings that are great about the R packages 'flextable'\n<https://davidgohel.github.io/flextable/> and 'officer'\n<https://davidgohel.github.io/officer/>, take the standard and\ncomplex pieces of formatting clinical tables for regulatory\nuse, and simplify the tedious pieces.",
  "License": "Apache License (>= 2)",
  "Encoding": "UTF-8",
  "RoxygenNote": "7.3.2",
  "Config/testthat/edition": "3",
  "Roxygen": "list(markdown = TRUE)",
  "VignetteBuilder": "knitr",
  "URL": "https://atorus-research.github.io/clinify/",
  "Config/pak/sysreqs": "libcairo2-dev cmake libfontconfig1-dev\nlibfreetype6-dev libfribidi-dev make libharfbuzz-dev libicu-dev\nlibjpeg-dev libpng-dev libtiff-dev libuv1-dev libwebp-dev\nlibxml2-dev libssl-dev",
  "Repository": "https://atorus-research.r-universe.dev",
  "Date/Publication": "2026-01-08 19:52:27 UTC",
  "RemoteUrl": "https://github.com/atorus-research/clinify",
  "RemoteRef": "HEAD",
  "RemoteSha": "9f0ed2029ddebf70c81ba0d9a65e2367eb4f1cd3",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-08 08:05:29 UTC",
    "User": "root"
  },
  "Author": "Mike Stackhouse [aut, cre] (ORCID:\n<https://orcid.org/0000-0001-6030-723X>),\nRoss Didenko [aut],\nYevhenii Boiko [aut],\nMarat Zakirov [ctb],\nRoman Rogoza [ctb],\nAtorus Research, Inc. [cph],\nIncyte Corporation [cph]",
  "Maintainer": "Mike Stackhouse <mike.stackhouse@atorusresearch.com>",
  "MD5sum": "214929bb49cdf8fdb3ba15ede6d2d3af",
  "_user": "atorus-research",
  "_type": "src",
  "_file": "clinify_0.3.0.9000.tar.gz",
  "_fileid": "6da45d98e352af987bba87ceb56c96691ff74cf222139c3eac216f8aeaf25b25",
  "_filesize": 1335692,
  "_sha256": "6da45d98e352af987bba87ceb56c96691ff74cf222139c3eac216f8aeaf25b25",
  "_created": "2026-05-08T08:05:29.000Z",
  "_published": "2026-05-22T14:01:20.515Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 77394820283,
      "time": 199,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "6874720825"
    },
    {
      "job": 77394820389,
      "time": 187,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "6874717336"
    },
    {
      "job": 77394820376,
      "time": 115,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "6874697216"
    },
    {
      "job": 77394820958,
      "time": 154,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "6874707240"
    },
    {
      "job": 77394819843,
      "time": 220,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "6874666375"
    },
    {
      "job": 77394819821,
      "time": 161,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7162351797"
    },
    {
      "job": 77394820253,
      "time": 166,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "6874712297"
    },
    {
      "job": 77394820975,
      "time": 146,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "6874706201"
    },
    {
      "job": 77394820631,
      "time": 139,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "6874703895"
    }
  ],
  "_buildurl": "https://github.com/r-universe/atorus-research/actions/runs/25544397088",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/atorus-research/clinify",
  "_commit": {
    "id": "9f0ed2029ddebf70c81ba0d9a65e2367eb4f1cd3",
    "author": "Michael Stackhouse <michaelstackhouse0614@gmail.com>",
    "committer": "GitHub <noreply@github.com>",
    "message": "Merge pull request #92 from atorus-research/development\n\nResolutions for Atorus reported issues",
    "time": 1767901947
  },
  "_maintainer": {
    "name": "Mike Stackhouse",
    "email": "mike.stackhouse@atorusresearch.com",
    "login": "mstackhouse",
    "twitter": "@mike_at_atorus",
    "uuid": 31387567,
    "orcid": "0000-0001-6030-723X"
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 4.2",
      "role": "Depends"
    },
    {
      "package": "flextable",
      "role": "Imports"
    },
    {
      "package": "officer",
      "version": ">= 0.7.2",
      "role": "Imports"
    },
    {
      "package": "magrittr",
      "role": "Imports"
    },
    {
      "package": "dplyr",
      "role": "Imports"
    },
    {
      "package": "knitr",
      "role": "Imports"
    },
    {
      "package": "htmltools",
      "role": "Imports"
    },
    {
      "package": "tidyselect",
      "role": "Imports"
    },
    {
      "package": "zoo",
      "role": "Imports"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "version": ">= 3.0.0",
      "role": "Suggests"
    },
    {
      "package": "Tplyr",
      "role": "Suggests"
    },
    {
      "package": "rvest",
      "role": "Suggests"
    },
    {
      "package": "withr",
      "role": "Suggests"
    },
    {
      "package": "xml2",
      "role": "Suggests"
    }
  ],
  "_owner": "atorus-research",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-24",
      "n": 1
    },
    {
      "week": "2025-27",
      "n": 1
    },
    {
      "week": "2025-28",
      "n": 1
    },
    {
      "week": "2026-02",
      "n": 1
    }
  ],
  "_tags": [
    {
      "name": "v0.3.0",
      "date": "2025-07-07"
    }
  ],
  "_stars": 6,
  "_contributors": [
    {
      "user": "mstackhouse",
      "count": 222,
      "uuid": 31387567
    },
    {
      "user": "hanose",
      "count": 3,
      "uuid": 38891321
    }
  ],
  "_userbio": {
    "uuid": 64594907,
    "type": "organization",
    "name": "Atorus Research"
  },
  "_downloads": {
    "count": 223,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/clinify"
  },
  "_devurl": "https://github.com/atorus-research/clinify",
  "_pkgdown": "https://atorus-research.github.io/clinify/",
  "_searchresults": 9,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/clinify.html",
    "extra/contents.json",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/atorus-research/clinify",
  "_realowner": "atorus-research",
  "_cranurl": true,
  "_releases": [
    {
      "version": "0.1.2",
      "date": "2025-03-13"
    },
    {
      "version": "0.3.0",
      "date": "2025-07-07"
    }
  ],
  "_exports": [
    "as_clindoc",
    "as_clintable",
    "clin_add_footnote_page",
    "clin_add_footnotes",
    "clin_add_titles",
    "clin_alt_pages",
    "clin_auto_page",
    "clin_col_widths",
    "clin_column_headers",
    "clin_default_table_width",
    "clin_group_by",
    "clin_group_pad",
    "clin_page_by",
    "clin_replace_pagenums",
    "clindoc",
    "clinify_caption_default",
    "clinify_docx_default",
    "clinify_footnotes_default",
    "clinify_grouplabel_default",
    "clinify_table_default",
    "clinify_titles_default",
    "clintable",
    "make_grouped_pagenums",
    "new_title_footnote",
    "write_clindoc"
  ],
  "_help": [
    {
      "page": "as_clintable",
      "title": "Convert a flextable into a clintable object",
      "topics": [
        "as_clintable"
      ]
    },
    {
      "page": "add_titles_footnotes",
      "title": "Add titles, footnotes, or a footnote page to a clintable or clindoc",
      "concept": [
        "add_titles_footnotes"
      ],
      "topics": [
        "clin_add_footnotes",
        "clin_add_footnote_page",
        "clin_add_titles"
      ]
    },
    {
      "page": "clin_alt_pages",
      "title": "Configure alternating pages during pagination of a clintable",
      "topics": [
        "clin_alt_pages"
      ]
    },
    {
      "page": "clin_auto_page",
      "title": "Enable Word Auto-Pagination Using Group Variable",
      "topics": [
        "clin_auto_page"
      ]
    },
    {
      "page": "clin_col_widths",
      "title": "Set column widths using percent",
      "topics": [
        "clin_col_widths"
      ]
    },
    {
      "page": "clin_column_headers",
      "title": "Set the column headers of the output clintable",
      "topics": [
        "clin_column_headers"
      ]
    },
    {
      "page": "clin_default_table_width",
      "title": "Get the Default Table Width for Clinical Documents",
      "topics": [
        "clin_default_table_width"
      ]
    },
    {
      "page": "clin_group_by",
      "title": "Configure a clintable to table by a grouping variable, which will be used as a label",
      "topics": [
        "clin_group_by"
      ]
    },
    {
      "page": "clin_group_pad",
      "title": "Add Padding Between Groups in a Clinical Flextable",
      "topics": [
        "clin_group_pad"
      ]
    },
    {
      "page": "clin_page_by",
      "title": "Configure pagination using a page variable",
      "topics": [
        "clin_page_by"
      ]
    },
    {
      "page": "clin_replace_pagenums",
      "title": "Replace Table Cells with Word Page Number Fields",
      "topics": [
        "clin_replace_pagenums"
      ]
    },
    {
      "page": "clindoc",
      "title": "Create a 'clindoc' object",
      "topics": [
        "as_clindoc",
        "clindoc"
      ]
    },
    {
      "page": "clinify_defaults",
      "title": "Apply Default Clinical Styling to Clintables",
      "concept": [
        "Clinify Defaults"
      ],
      "topics": [
        "clinify_caption_default",
        "clinify_docx_default",
        "clinify_footnotes_default",
        "clinify_grouplabel_default",
        "clinify_table_default",
        "clinify_titles_default"
      ]
    },
    {
      "page": "clintable",
      "title": "Create a new clintable object",
      "topics": [
        "clintable"
      ]
    },
    {
      "page": "make_grouped_pagenums",
      "title": "Assign Page Numbers to Presorted Grouped Data",
      "topics": [
        "make_grouped_pagenums"
      ]
    },
    {
      "page": "new_title_footnote",
      "title": "Create a new title or footnote flextable",
      "topics": [
        "new_title_footnote"
      ]
    },
    {
      "page": "print_methods",
      "title": "Clintable print method",
      "concept": [
        "Print methods"
      ],
      "topics": [
        "knit_print.clintable",
        "print.clintable"
      ]
    },
    {
      "page": "write_clindoc",
      "title": "Clintable write method",
      "topics": [
        "write_clindoc"
      ]
    }
  ],
  "_pkglogo": "https://github.com/atorus-research/clinify/raw/HEAD/man/figures/logo.svg",
  "_readme": "https://github.com/atorus-research/clinify/raw/HEAD/README.md",
  "_rundeps": [
    "askpass",
    "base64enc",
    "bslib",
    "cachem",
    "cli",
    "cpp11",
    "data.table",
    "digest",
    "dplyr",
    "evaluate",
    "fastmap",
    "flextable",
    "fontawesome",
    "fontBitstreamVera",
    "fontLiberation",
    "fontquiver",
    "fs",
    "gdtools",
    "generics",
    "glue",
    "highr",
    "htmltools",
    "jquerylib",
    "jsonlite",
    "knitr",
    "lattice",
    "lifecycle",
    "magrittr",
    "memoise",
    "mime",
    "officer",
    "openssl",
    "pillar",
    "pkgconfig",
    "purrr",
    "R6",
    "ragg",
    "rappdirs",
    "Rcpp",
    "rlang",
    "rmarkdown",
    "sass",
    "stringi",
    "stringr",
    "sys",
    "systemfonts",
    "textshaping",
    "tibble",
    "tidyr",
    "tidyselect",
    "tinytex",
    "utf8",
    "uuid",
    "vctrs",
    "withr",
    "xfun",
    "xml2",
    "yaml",
    "zip",
    "zoo"
  ],
  "_vignettes": [
    {
      "source": "write.Rmd",
      "filename": "write.html",
      "title": "Document Objects and Saving",
      "engine": "knitr::rmarkdown",
      "headings": [],
      "created": "2025-06-10 14:05:03",
      "modified": "2025-06-10 14:05:03",
      "commits": 1
    },
    {
      "source": "end_to_end.Rmd",
      "filename": "end_to_end.html",
      "title": "End-to-End Example",
      "engine": "knitr::rmarkdown",
      "headings": [],
      "created": "2025-03-31 14:54:56",
      "modified": "2025-06-10 14:05:03",
      "commits": 2
    },
    {
      "source": "clinify.Rmd",
      "filename": "clinify.html",
      "title": "Getting Started",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Basics",
        "Titles and Footnotes",
        "Pagination and Alternating Pages",
        "Column Headers and Widths",
        "Writing to DOCX",
        "Why this framework?"
      ],
      "created": "2025-03-04 21:45:18",
      "modified": "2025-06-10 14:05:03",
      "commits": 4
    },
    {
      "source": "pagination.Rmd",
      "filename": "pagination.html",
      "title": "Pagination",
      "engine": "knitr::rmarkdown",
      "headings": [
        "clin_auto_page()",
        "clin_page_by()",
        "clin_group_by()",
        "clin_alt_pages()"
      ],
      "created": "2025-03-31 14:54:56",
      "modified": "2025-06-10 14:05:03",
      "commits": 2
    },
    {
      "source": "defaults.Rmd",
      "filename": "defaults.html",
      "title": "Setting Clinify Defaults",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Creating Setting Functions",
        "clinify_docx_default",
        "clinify_titles_default and clin_footnotes_default()",
        "clinify_table_default",
        "clinify_grouplabel_default",
        "clinify_caption_default",
        "Applying the Options"
      ],
      "created": "2025-03-31 14:54:56",
      "modified": "2026-01-08 19:52:27",
      "commits": 4
    },
    {
      "source": "titles_footnotes.Rmd",
      "filename": "titles_footnotes.html",
      "title": "Titles and Footnotes",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Titles and Footnotes",
        "Footnote Pages"
      ],
      "created": "2025-03-31 14:54:56",
      "modified": "2025-06-10 14:05:03",
      "commits": 2
    }
  ],
  "_score": 5.857332496431268,
  "_indexed": true,
  "_nocasepkg": "clinify",
  "_universes": [
    "atorus-research",
    "mstackhouse"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.3.0.9000",
      "date": "2026-05-08T08:08:06.000Z",
      "distro": "noble",
      "commit": "9f0ed2029ddebf70c81ba0d9a65e2367eb4f1cd3",
      "fileid": "376d887a00b7adbe2d2adf67ec8d2a5b60f0844302b4bb5467b84245e4cecb74",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/atorus-research/actions/runs/25544397088"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "0.3.0.9000",
      "date": "2026-05-08T08:08:01.000Z",
      "distro": "noble",
      "commit": "9f0ed2029ddebf70c81ba0d9a65e2367eb4f1cd3",
      "fileid": "22b3223fb417a6c6285b24acbcd49115b674b1504079c87bb28b53e5547e18fa",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/atorus-research/actions/runs/25544397088"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.3.0.9000",
      "date": "2026-05-08T08:07:03.000Z",
      "commit": "9f0ed2029ddebf70c81ba0d9a65e2367eb4f1cd3",
      "fileid": "dcc2f451f7c68aa985c63ceec66e87ff80a9c558867dba9f19fa484e1408c4d0",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/atorus-research/actions/runs/25544397088"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "0.3.0.9000",
      "date": "2026-05-08T08:07:26.000Z",
      "commit": "9f0ed2029ddebf70c81ba0d9a65e2367eb4f1cd3",
      "fileid": "2450b6cb241e346f153a8807838c283b15746cef3c2afac2269c217069447a46",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/atorus-research/actions/runs/25544397088"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.3.0.9000",
      "date": "2026-05-08T08:07:12.000Z",
      "commit": "9f0ed2029ddebf70c81ba0d9a65e2367eb4f1cd3",
      "fileid": "7591cabdc9cad6e74bab85397ebfaf16eaf72b4282d33c4c9fd3864a1fc2b483",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/atorus-research/actions/runs/25544397088"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.3.0.9000",
      "date": "2026-05-08T08:07:01.000Z",
      "commit": "9f0ed2029ddebf70c81ba0d9a65e2367eb4f1cd3",
      "fileid": "33f459e24c08cf50df7e13e4bf23caea9eeca37734eccf2d912e1db946aeef56",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/atorus-research/actions/runs/25544397088"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "0.3.0.9000",
      "date": "2026-05-08T08:06:56.000Z",
      "commit": "9f0ed2029ddebf70c81ba0d9a65e2367eb4f1cd3",
      "fileid": "7437330c423810fd62331cc3abb01dbeac117ffbbc8b92b004496109a0b28f5b",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/atorus-research/actions/runs/25544397088"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.3.0.9000",
      "date": "2026-05-22T14:00:33.000Z",
      "commit": "9f0ed2029ddebf70c81ba0d9a65e2367eb4f1cd3",
      "fileid": "ca2ba0d289cb033a889a1b4a448bcc5ac4a34c94bc3a47a6dc370170f3afb039",
      "status": "success",
      "buildurl": "https://github.com/r-universe/atorus-research/actions/runs/25544397088"
    }
  ]
}