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  "Title": "Clinical Table Styling Tools and Utilities",
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  "Description": "The primary motivation of this package is to take the\nthings that are great about the R packages 'flextable'\n<https://davidgohel.github.io/flextable/> and 'officer'\n<https://davidgohel.github.io/officer/>, take the standard and\ncomplex pieces of formatting clinical tables for regulatory\nuse, and simplify the tedious pieces.",
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  "URL": "https://atorus-research.github.io/clinify/",
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  "Repository": "https://atorus-research.r-universe.dev",
  "Date/Publication": "2026-01-08 19:52:27 UTC",
  "RemoteUrl": "https://github.com/atorus-research/clinify",
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  "Maintainer": "Mike Stackhouse <mike.stackhouse@atorusresearch.com>",
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    "extra/citation.json",
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    "clin_add_footnote_page",
    "clin_add_footnotes",
    "clin_add_titles",
    "clin_alt_pages",
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    "clin_col_widths",
    "clin_column_headers",
    "clin_default_table_width",
    "clin_group_by",
    "clin_group_pad",
    "clin_page_by",
    "clin_replace_pagenums",
    "clindoc",
    "clinify_caption_default",
    "clinify_docx_default",
    "clinify_footnotes_default",
    "clinify_grouplabel_default",
    "clinify_table_default",
    "clinify_titles_default",
    "clintable",
    "make_grouped_pagenums",
    "new_title_footnote",
    "write_clindoc"
  ],
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      "title": "Convert a flextable into a clintable object",
      "topics": [
        "as_clintable"
      ]
    },
    {
      "page": "add_titles_footnotes",
      "title": "Add titles, footnotes, or a footnote page to a clintable or clindoc",
      "concept": [
        "add_titles_footnotes"
      ],
      "topics": [
        "clin_add_footnotes",
        "clin_add_footnote_page",
        "clin_add_titles"
      ]
    },
    {
      "page": "clin_alt_pages",
      "title": "Configure alternating pages during pagination of a clintable",
      "topics": [
        "clin_alt_pages"
      ]
    },
    {
      "page": "clin_auto_page",
      "title": "Enable Word Auto-Pagination Using Group Variable",
      "topics": [
        "clin_auto_page"
      ]
    },
    {
      "page": "clin_col_widths",
      "title": "Set column widths using percent",
      "topics": [
        "clin_col_widths"
      ]
    },
    {
      "page": "clin_column_headers",
      "title": "Set the column headers of the output clintable",
      "topics": [
        "clin_column_headers"
      ]
    },
    {
      "page": "clin_default_table_width",
      "title": "Get the Default Table Width for Clinical Documents",
      "topics": [
        "clin_default_table_width"
      ]
    },
    {
      "page": "clin_group_by",
      "title": "Configure a clintable to table by a grouping variable, which will be used as a label",
      "topics": [
        "clin_group_by"
      ]
    },
    {
      "page": "clin_group_pad",
      "title": "Add Padding Between Groups in a Clinical Flextable",
      "topics": [
        "clin_group_pad"
      ]
    },
    {
      "page": "clin_page_by",
      "title": "Configure pagination using a page variable",
      "topics": [
        "clin_page_by"
      ]
    },
    {
      "page": "clin_replace_pagenums",
      "title": "Replace Table Cells with Word Page Number Fields",
      "topics": [
        "clin_replace_pagenums"
      ]
    },
    {
      "page": "clindoc",
      "title": "Create a 'clindoc' object",
      "topics": [
        "as_clindoc",
        "clindoc"
      ]
    },
    {
      "page": "clinify_defaults",
      "title": "Apply Default Clinical Styling to Clintables",
      "concept": [
        "Clinify Defaults"
      ],
      "topics": [
        "clinify_caption_default",
        "clinify_docx_default",
        "clinify_footnotes_default",
        "clinify_grouplabel_default",
        "clinify_table_default",
        "clinify_titles_default"
      ]
    },
    {
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      "title": "Create a new clintable object",
      "topics": [
        "clintable"
      ]
    },
    {
      "page": "make_grouped_pagenums",
      "title": "Assign Page Numbers to Presorted Grouped Data",
      "topics": [
        "make_grouped_pagenums"
      ]
    },
    {
      "page": "new_title_footnote",
      "title": "Create a new title or footnote flextable",
      "topics": [
        "new_title_footnote"
      ]
    },
    {
      "page": "print_methods",
      "title": "Clintable print method",
      "concept": [
        "Print methods"
      ],
      "topics": [
        "knit_print.clintable",
        "print.clintable"
      ]
    },
    {
      "page": "write_clindoc",
      "title": "Clintable write method",
      "topics": [
        "write_clindoc"
      ]
    }
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